ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2nxyA2 - ECOD Domain | ECOD

ECOD/Domains/e2nxyA2

e2nxyA2

UID: 001826872

RepresentativePDB

Range: A:256-473
PDB: 2NXY chain A(all domains)
UniProt: Q49DS8 (all domains)
Gene: env

Molecule: ENVELOPE GLYCOPROTEIN GP120

3D Structure

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Related Domains

Browse other domains in GP120 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein L31e-like(259)

HH-groupRibosomal protein L31e/gp120 outer domain(259.1)

TT-groupRibosomal protein L31e/gp120 outer domain(259.1.1)

FFamilyGP120(259.1.1.1)

Ligands

in contact, ≤ 4 Å

Hexane-1,6-DiolHEZ
drugDrugBank DB02210
N-AcetylglucosamineNAG
drugDrugBank DB00141

+ 1 additive (Tromethamine)

Pfam Families

Envelope glycoprotein GP120

External Links

ECOD PDB View: 2NXY RCSB PDB: 2NXY PDBe: 2NXY UniProt: Q49DS8

Downloads

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TromethamineTRS
DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.