ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3m1uB1 - ECOD Domain | ECOD

ECOD/Domains/e3m1uB1

e3m1uB1

UID: 001828190

RepresentativePDB

Range: B:42-223
PDB: 3M1U chain B(all domains)
UniProt: Q72DN3 (all domains)
Gene: DVU_0896

Molecule: Putative gamma-D-glutamyl-L-diamino acid endopeptidase

3D Structure

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Related Domains

Browse other domains in N_NLPC_P60,SH3_6 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilyN_NLPC_P60,SH3_6(4.1.1.82)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 2 additives (Glycerin, 2-(N-morpholino)ethanesulfonic acid)

GlycerinGOL
DrugBank DB09462
2-(N-morpholino)ethanesulfonic acidMES

Pfam Families

PF12912N_NLPC_P60

NLPC_P60 stabilising domain, N term

SH3 domain (SH3b1 type)

ClanCL0010SH3

External Links

ECOD PDB View: 3M1U RCSB PDB: 3M1U PDBe: 3M1U UniProt: Q72DN3

Downloads

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DrugBank DB03814

Shown in the structure viewer. Drug annotations from DrugDomain.