ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1yymP2 - ECOD Domain | ECOD

ECOD/Domains/e1yymP2

e1yymP2

UID: 001829842

PDB

Range: P:1256-1297,P:1330-1473
PDB: 1YYM chain P(all domains)
UniProt: P35961 (all domains)
Gene: env

Molecule: Exterior membrane glycoprotein(GP120),Exterior membrane glycoprotein(GP120),Exterior membrane glycoprotein(GP120)

3D Structure

Loading viewer...

Related Domains

Browse other domains in GP120 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein L31e-like(259)

HH-groupRibosomal protein L31e/gp120 outer domain(259.1)

TT-groupRibosomal protein L31e/gp120 outer domain(259.1.1)

FFamilyGP120(259.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141

+ 1 additive (Isopropyl alcohol)

Isopropyl alcoholIPA
DrugBank DB02325

Shown in the structure viewer.

Pfam Families

Envelope glycoprotein GP120

External Links

ECOD PDB View: 1YYM RCSB PDB: 1YYM PDBe: 1YYM UniProt: P35961

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.