ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5b43A2 - ECOD Domain | ECOD

ECOD/Domains/e5b43A2

e5b43A2

UID: 001830956

RepresentativePDB

Range: A:598-718
PDB: 5B43 chain A(all domains)
UniProt: U2UMQ6 (all domains)
Gene: cas12a

Molecule: CRISPR-associated endonuclease Cas12a (EC 3.1.21.1) (EC 4.6.1.22) (AsCpf1) (CRISPR-associated endonuclease Cpf1)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Cpf1_PI-like →

Classification

AArchitecturealpha arrays(a.6)

XX-groupCRISPR-associated endonuclease Cpf1 PI (PAM-interacting) domain(1069)

HH-groupCRISPR-associated endonuclease Cpf1 PI (PAM-interacting) domain(1069.1)

TT-groupCRISPR-associated endonuclease Cpf1 PI (PAM-interacting) domain(1069.1.1)

FFamilyCpf1_PI-like(1069.1.1.1)

Pfam Families

PF22222Cpf1_PI-like

CRISPR-associated endonuclease Cpf1 PI domain

External Links

ECOD PDB View: 5B43 RCSB PDB: 5B43 PDBe: 5B43 UniProt: U2UMQ6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure