ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2xd1B2 - ECOD Domain | ECOD

ECOD/Domains/e2xd1B2

e2xd1B2

UID: 001834325

PDB

Range: B:106-120,B:337-456,B:561-789
PDB: 2XD1 chain B(all domains)
UniProt: Q7CRA4 (all domains)
Gene: pbp1b

Molecule: PENICILLIN-BINDING PROTEIN 1B

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyTranspeptidase(223.3.1.3)

Ligands

in contact, ≤ 4 Å

(2R)-2-[(1R)-1-[[(2Z)-2-(2-Amino-1,3-thiazol-4-yl)-2-methoxyiminoacetyl]amino]-2-oxoethyl]-5-methylidene-2H-1,3-thiazine-4-carboxylic acidCEF
drugDrugBank DB08375

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 2XD1 RCSB PDB: 2XD1 PDBe: 2XD1 UniProt: Q7CRA4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.