ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jlvD1 - ECOD Domain | ECOD

ECOD/Domains/e5jlvD1

e5jlvD1

UID: 001842222

PDB

Range: D:474-564
PDB: 5JLV chain D(all domains)
UniProt: Q496J9 (all domains)
Gene: SV2C

Molecule: Synaptic vesicle glycoprotein 2C

3D Structure

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Related Domains

Browse other domains in LD_SV2 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupPentapeptide repeats(207.9)

TT-groupPentapeptide repeats(207.9.1)

FFamilyLD_SV2(207.9.1.5)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

SV2A/B/C luminal domain

ClanCL0505Pentapeptide

External Links

ECOD PDB View: 5JLV RCSB PDB: 5JLV PDBe: 5JLV UniProt: Q496J9

Downloads

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