ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5essA2 - ECOD Domain | ECOD

ECOD/Domains/e5essA2

e5essA2

UID: 001842841

PDB

Range: A:348-554
PDB: 5ESS chain A(all domains)
UniProt: P9WK11 (all domains)
Gene: menD

Molecule: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase

3D Structure

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Related Domains

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Classification

AArchitecture—

XX-group—

HH-group—

TT-group—

FFamily—

Ligands

in contact, ≤ 4 Å

DiphosphateDPO
Magnesium ionMG
metal
4-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-5-[2-[oxidanyl(phosphonooxy)phosphoryl]oxyethyl]-1,3-thiazol-3-ium-2-yl]-4-oxidanyl-butanoic acidTOG

External Links

ECOD PDB View: 5ESS RCSB PDB: 5ESS PDBe: 5ESS UniProt: P9WK11

Downloads

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within 5 Å only

+ 1 additive (Formic acid)

Formic acidFMT

Shown in the structure viewer. Drug annotations from DrugDomain.