ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5iitD1 - ECOD Domain | ECOD

ECOD/Domains/e5iitD1

e5iitD1

UID: 001855740

PDB

Range: D:181-367
PDB: 5IIT chain D(all domains)
UniProt: P47075 (all domains)
Gene: VTC4

Molecule: Vacuolar transporter chaperone 4,Core histone macro-H2A.1

3D Structure

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Related Domains

Browse other domains in Macro →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupMacro domain-like(7529)

HH-groupMacro domain-like(7529.1)

TT-groupMacro domain-like(7529.1.1)

FFamilyMacro(7529.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (2-(N-morpholino)ethanesulfonic acid, Sulfate ion)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

Macro domain

ClanCL0223MACRO

External Links

ECOD PDB View: 5IIT RCSB PDB: 5IIT PDBe: 5IIT UniProt: P47075

Downloads

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Drug annotations from DrugDomain.