ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4b3nA2 - ECOD Domain | ECOD

ECOD/Domains/e4b3nA2

e4b3nA2

UID: 000185669

RepresentativePDB

Range: A:1287-1493
PDB: 4B3N chain A(all domains)
UniProt: Q0PF16 (all domains)
Gene: TRIM5

Molecule: MALTOSE-BINDING PERIPLASMIC PROTEIN, TRIPARTITE MOTIF-CONTAINING PROTEIN 5

3D Structure

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Related Domains

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Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupConcanavalin A-like(10.1)

TT-groupConcanavalin A-like lectins/glucanases(10.1.1)

FFamilySPRY(10.1.1.8)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (2-(N-morpholino)ethanesulfonic acid)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

SPRY domain

ClanCL0004Concanavalin

External Links

ECOD PDB View: 4B3N RCSB PDB: 4B3N PDBe: 4B3N UniProt: Q0PF16

Downloads

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