ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5i3mC1 - ECOD Domain | ECOD

ECOD/Domains/e5i3mC1

e5i3mC1

UID: 001859749

PDB

Range: C:107-263
PDB: 5I3M chain C(all domains)
UniProt: P39900 (all domains)
Gene: MMP12

Molecule: Macrophage metalloelastase

3D Structure

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Related Domains

Browse other domains in Peptidase_M10 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M10(2498.1.1.1)

Ligands

in contact, ≤ 4 Å

(2S)-2-{[2-({[(2R,3R,4R,5S,6R)-3-(acetylamino)-4,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]carbamothioyl}amino)ethyl](biphenyl-4-ylsulfonyl)amino}-3-methylbutanoic acid (non-preferred name)67F
Calcium ionCA
metal
Zinc ion

Pfam Families

PF00413Peptidase_M10

Matrixin

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 5I3M RCSB PDB: 5I3M PDBe: 5I3M UniProt: P39900

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 2 additives (1,4-Dioxane, 1,2-ETHANEDIOL)

1,4-DioxaneDIO
DrugBank DB03316
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.