ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ydeB1 - ECOD Domain | ECOD

ECOD/Domains/e4ydeB1

e4ydeB1

UID: 001862408

PDB

Range: B:110-580
PDB: 4YDE chain B(all domains)

Molecule: Protein farnesyltransferase/geranylgeranyltransferase type-1 Subunit beta

3D Structure

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Related Domains

Browse other domains in Prenyltrans →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupalpha/alpha toroid(109.2)

TT-groupalpha/alpha toroid(109.2.1)

FFamilyPrenyltrans(109.2.1.1)

Ligands

in contact, ≤ 4 Å

(3R,7S)-3,7,11-trimethyldodecyl trihydrogen diphosphate4C7
Zinc ionZN
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Pfam Families

PF00432Prenyltrans

Prenyltransferase alpha-alpha toroid domain

ClanCL00596_Hairpin

External Links

ECOD PDB View: 4YDE RCSB PDB: 4YDE PDBe: 4YDE

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.