ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5j60A1 - ECOD Domain | ECOD

ECOD/Domains/e5j60A1

e5j60A1

UID: 001868637

RepresentativePDB

Range: A:-2-118,A:241-317
PDB: 5J60 chain A(all domains)
UniProt: Q7NMP6 (all domains)
Gene: glr0719

Molecule: Thioredoxin reductase

3D Structure

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Related Domains

Browse other domains in DAO, Pyr_redox_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFAD/NAD(P)-binding domain(2003.1.2)

FFamilyDAO, Pyr_redox_2(2003.1.2.94)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147
Calcium ionCA
metal

+ 1 additive (Tetraethylene glycol)

Pfam Families

FAD dependent oxidoreductase

ClanCL0063NADP_Rossmann

PF07992Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5J60 RCSB PDB: 5J60 PDBe: 5J60 UniProt: Q7NMP6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.