ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5kewA1 - ECOD Domain | ECOD

ECOD/Domains/e5kewA1

e5kewA1

UID: 001870508

RepresentativePDB

Range: A:165-253
PDB: 5KEW chain A(all domains)
UniProt: Q87GI4 (all domains)
Gene: VPA1332

Molecule: VtrA Protein

3D Structure

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Related Domains

Browse other domains in VtrA_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupdsRBD-like(330)

HH-groupVtrA protein periplasmic domain(330.15)

TT-groupVtrA protein periplasmic domain(330.15.1)

FFamilyVtrA_C(330.15.1.1)

Ligands

in contact, ≤ 4 Å

Taurodeoxycholate6SB

+ 2 additives (Acetate, 1,2-ETHANEDIOL)

AcetateACT
DrugBank DB14511
1,2-ETHANEDIOLEDO

Pfam Families

VtrA C-terminal periplasmic domain

External Links

ECOD PDB View: 5KEW RCSB PDB: 5KEW PDBe: 5KEW UniProt: Q87GI4

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.