ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5dysA1 - ECOD Domain | ECOD

ECOD/Domains/e5dysA1

e5dysA1

UID: 001870800

PDB

Range: A:0-326
PDB: 5DYS chain A(all domains)
UniProt: P02699 (all domains)
Gene: RHO

Molecule: Rhodopsin

3D Structure

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Related Domains

Browse other domains in 7tm_1,Rhodopsin_N →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFamily A G protein-coupled receptor-like(5001)

HH-groupFamily A G protein-coupled receptor-like(5001.1)

TT-groupFamily A G protein-coupled receptor-like(5001.1.1)

FFamily7tm_1,Rhodopsin_N(5001.1.1.2)

Ligands

in contact, ≤ 4 Å

Palmitic AcidPLM
drugDrugBank DB03796
RetinalRET

+ 3 additives (Acetate, Sulfate ion, octyl beta-D-glucopyranoside)

Acetate

Pfam Families

7 transmembrane receptor (rhodopsin family)

ClanCL0192GPCR_A

PF10413Rhodopsin_N

Amino terminal of the G-protein receptor rhodopsin

External Links

ECOD PDB View: 5DYS RCSB PDB: 5DYS PDBe: 5DYS UniProt: P02699

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

Sulfate ionSO4

DrugBank DB14546

octyl beta-D-glucopyranosideBOG

Shown in the structure viewer. Drug annotations from DrugDomain.