ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5kzhD2 - ECOD Domain | ECOD

ECOD/Domains/e5kzhD2

e5kzhD2

UID: 001871809

PDB

Range: D:35-75,D:173-274
PDB: 5KZH chain D(all domains)
UniProt: Q5QT35 (all domains)
Gene: oxa-51

Molecule: Beta-lactamase

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyTranspeptidase(223.3.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Acetate, Formic acid)

AcetateACT
DrugBank DB14511
Formic acidFMT
DrugBank DB01942

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 5KZH RCSB PDB: 5KZH PDBe: 5KZH UniProt: Q5QT35

Downloads

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