ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5lf0J1 - ECOD Domain | ECOD

ECOD/Domains/e5lf0J1

e5lf0J1

UID: 001871954

PDB

Range: J:1-196
PDB: 5LF0 chain J(all domains)
UniProt: P49721 (all domains)
Gene: PSMB2

Molecule: Proteasome subunit beta type-2

3D Structure

Loading viewer...

Related Domains

Browse other domains in Proteasome →

Classification

AArchitecturea+b four layers(a.13)

XX-groupNtn/PP2C(210)

HH-groupNtn(210.1)

TT-groupProteasome subunits(210.1.1)

FFamilyProteasome(210.1.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Magnesium ionMG
metalwithin 5 Å only

+ 1 additive (Pentaethylene glycol)

Pentaethylene glycol1PE

Pfam Families

PF00227Proteasome

Proteasome subunit

ClanCL0052NTN

External Links

ECOD PDB View: 5LF0 RCSB PDB: 5LF0 PDBe: 5LF0 UniProt: P49721

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.