ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ax7B4 - ECOD Domain | ECOD

ECOD/Domains/e3ax7B4

e3ax7B4

UID: 001872724

PDB

Range: B:695-954
PDB: 3AX7 chain B(all domains)
UniProt: P80457 (all domains)
Gene: XDH

Molecule: Xanthine dehydrogenase/oxidase

3D Structure

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Related Domains

Browse other domains in MoCoBD_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupMocoBD/DmpA-related(231)

HH-groupMocoBD/DmpA-related(231.1)

TT-groupMolybdenum cofactor-binding domain(231.1.1)

FFamilyMoCoBD_1(231.1.1.1)

Ligands

in contact, ≤ 4 Å

Salicylic acidSAL
drugDrugBank DB00936
Calcium ionCA
metal
FE2/S2 (INORGANIC) CLUSTER

Pfam Families

PF02738MoCoBD_1

Molybdopterin cofactor-binding domain

ClanCL0635DmpA_ArgJ

External Links

ECOD PDB View: 3AX7 RCSB PDB: 3AX7 PDBe: 3AX7 UniProt: P80457

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

{[(5aR,8R,9aR)-2-amino-4-oxo-6,7-di(sulfanyl-kappaS)-3,5,5a,8,9a,10-hexahydro-4H-pyrano[3,2-g]pteridin-8-yl]methyl dihydrogenato(2-) phosphate}(hydroxy)oxo(thioxo)molybdenumXAX

+ 2 additives (Glycerin, Bicarbonate ion)

GlycerinGOL
DrugBank DB09462
Bicarbonate ionBCT

Shown in the structure viewer. Drug annotations from DrugDomain.