ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5ibvA1 - ECOD Domain | ECOD

ECOD/Domains/e5ibvA1

e5ibvA1

UID: 001877512

PDB

Range: A:77-260
PDB: 5IBV chain A(all domains)
UniProt: Q9IFX1 (all domains)
Gene: ORF2

Molecule: Capsid polyprotein VP90 [Cleaved into: Capsid polyprotein VP70; Core protein VP34; Spike protein VP27; Spike protein VP25]

3D Structure

Loading viewer...

Related Domains

Browse other domains in Astro_capsid_N →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyAstro_capsid_N(10.2.1.32)

Pfam Families

PF03115Astro_capsid_N

Astrovirus capsid protein nucleoplasmin-like domain

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 5IBV RCSB PDB: 5IBV PDBe: 5IBV UniProt: Q9IFX1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure