ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5eixB3 - ECOD Domain | ECOD

ECOD/Domains/e5eixB3

e5eixB3

UID: 001878566

PDB

Range: B:400-995
PDB: 5EIX chain B(all domains)
UniProt: R4YE07 (all domains)

Molecule: DNA topoisomerase 4 subunit B,DNA topoisomerase 4 subunit A

3D Structure

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Related Domains

Browse other domains in DNA_gyraseB_C,Toprim →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupToprim domain(2006.1.3)

FFamilyDNA_gyraseB_C,Toprim(2006.1.3.1)

Ligands

in contact, ≤ 4 Å

LevofloxacinLFX
drugDrugBank DB01137within 5 Å only
Magnesium ionMG
metal

Shown in the structure viewer.

Pfam Families

PF00986DNA_gyraseB_C

DNA gyrase B subunit, carboxyl terminus

Toprim domain

ClanCL0413Toprim-like

External Links

ECOD PDB View: 5EIX RCSB PDB: 5EIX PDBe: 5EIX UniProt: R4YE07

Downloads

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Drug annotations from DrugDomain.