ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5j09A1 - ECOD Domain | ECOD

ECOD/Domains/e5j09A1

e5j09A1

UID: 001878979

PDB

Range: A:46-238
PDB: 5J09 chain A(all domains)
UniProt: A0A023R6W2 (all domains)
Gene: Cap

Molecule: Capsid protein

3D Structure

Loading viewer...

Related Domains

Browse other domains in Circo_capsid →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyCirco_capsid(10.2.1.29)

Pfam Families

PF02443Circo_capsid

Circovirus capsid protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 5J09 RCSB PDB: 5J09 PDBe: 5J09 UniProt: A0A023R6W2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure