ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5dk5A1 - ECOD Domain | ECOD

ECOD/Domains/e5dk5A1

e5dk5A1

UID: 001883463

PDB

Range: A:5-298
PDB: 5DK5 chain A(all domains)
UniProt: Q10905 (all domains)
Gene: crn-4

Molecule: Cell death-related nuclease 4

3D Structure

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Related Domains

Browse other domains in RNase_T →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyRNase_T(2484.1.1.13)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
Zinc ionZN
metal

+ 2 additives (Isopropyl alcohol, 2-(N-morpholino)ethanesulfonic acid)

Isopropyl alcohol

Pfam Families

PF00929RNase_T

Exonuclease

ClanCL0219RNase_H

External Links

ECOD PDB View: 5DK5 RCSB PDB: 5DK5 PDBe: 5DK5 UniProt: Q10905

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB02325

2-(N-morpholino)ethanesulfonic acidMES

DrugBank DB03814

Shown in the structure viewer. Drug annotations from DrugDomain.