ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5ijlA2 - ECOD Domain | ECOD

ECOD/Domains/e5ijlA2

e5ijlA2

UID: 001885533

RepresentativePDB

Range: A:668-727
PDB: 5IJL chain A(all domains)
UniProt: Q9V2F4 (all domains)
Gene: polC

Molecule: DNA polymerase II large subunit (Pol II) (EC 2.7.7.7) (Exodeoxyribonuclease large subunit) (EC 3.1.11.1) [Cleaved into: Pab polC intein (Pab pol II intein)]

3D Structure

Loading viewer...

Related Domains

Browse other domains in PolC_DP2_central →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRubredoxin-like(375)

HH-groupRubredoxin-related(375.1)

TT-groupRubredoxin-related(375.1.1)

FFamilyPolC_DP2_central(375.1.1.204)

Pfam Families

PF24844PolC_DP2_central

DNA polymerase II large subunit DP2, central domain

External Links

ECOD PDB View: 5IJL RCSB PDB: 5IJL PDBe: 5IJL UniProt: Q9V2F4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure