ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ixsB1 - ECOD Domain | ECOD

ECOD/Domains/e5ixsB1

e5ixsB1

UID: 001886074

PDB

Range: B:159-331
PDB: 5IXS chain B(all domains)
UniProt: P00338 (all domains)
Gene: LDHA

Molecule: L-lactate dehydrogenase A chain

3D Structure

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Related Domains

Browse other domains in Ldh_1_C →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupLDH C-terminal domain-like(279)

HH-groupLDH C-terminal domain-like(279.1)

TT-groupLDH C-terminal domain-like(279.1.1)

FFamilyLdh_1_C(279.1.1.1)

Ligands

in contact, ≤ 4 Å

(6R)-3-[(2-chlorophenyl)sulfanyl]-4-hydroxy-6-(3-hydroxyphenyl)-6-(thiophen-3-yl)-5,6-dihydropyridin-2(1H)-one6EY
1,4,5,6-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDETXD

+ 2 additives (Sulfate ion, HEPES)

Sulfate ionSO4

Pfam Families

PF02866Ldh_1_C

lactate/malate dehydrogenase, alpha/beta C-terminal domain

ClanCL0341LDH_C

External Links

ECOD PDB View: 5IXS RCSB PDB: 5IXS PDBe: 5IXS UniProt: P00338

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

HEPESEPE

DrugBank DB16872within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.