ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5l3gA2 - ECOD Domain | ECOD

ECOD/Domains/e5l3gA2

e5l3gA2

UID: 001887143

PDB

Range: A:274-639,A:747-836
PDB: 5L3G chain A(all domains)
UniProt: O60341 (all domains)
Gene: KDM1A

Molecule: Lysine-specific histone demethylase 1A

3D Structure

Loading viewer...

Related Domains

Browse other domains in Flavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domain →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFAD/NAD(P)-binding domain(2003.1.2)

FFamilyFlavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domain(2003.1.2.18)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147
Sodium ionNA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01593Amino_oxidase

Flavin containing amine oxidoreductase

ClanCL0063NADP_Rossmann

PF13450NAD_binding_8

NAD(P)-binding Rossmann-like domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5L3G RCSB PDB: 5L3G PDBe: 5L3G UniProt: O60341

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure