ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5lp6B1 - ECOD Domain | ECOD

ECOD/Domains/e5lp6B1

e5lp6B1

UID: 001887188

PDB

Range: B:246-438
PDB: 5LP6 chain B(all domains)
UniProt: Q6B856 (all domains)
Gene: TUBB2B

Molecule: Tubulin beta-2B chain

3D Structure

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Related Domains

Browse other domains in Tubulin_C →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-groupTubulin C-terminal domain-like(301.6)

TT-groupTubulin C-terminal domain-like(301.6.1)

FFamilyTubulin_C(301.6.1.1)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137
~{N}-[(7~{R})-1,2,3-trimethoxy-10-methylsulfanyl-9-oxidanylidene-6,7-dihydro-5~{H}-benzo[a]heptalen-7-yl]ethanamide71P
Magnesium ion

Pfam Families

PF03953Tubulin_C

Tubulin C-terminal domain

ClanCL0442Tubulin_C

External Links

ECOD PDB View: 5LP6 RCSB PDB: 5LP6 PDBe: 5LP6 UniProt: Q6B856

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (2-(N-morpholino)ethanesulfonic acid)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Shown in the structure viewer. Drug annotations from DrugDomain.