ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5lvoA1 - ECOD Domain | ECOD

ECOD/Domains/e5lvoA1

e5lvoA1

UID: 001892002

PDB

Range: A:73-359
PDB: 5LVO chain A(all domains)
UniProt: O15530 (all domains)
Gene: PDPK1

Molecule: 3-phosphoinositide-dependent protein kinase 1

3D Structure

Loading viewer...

Related Domains

Browse other domains in Pkinase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupProtein kinase(206.1.1)

FFamilyPkinase(206.1.1.1)

Ligands

in contact, ≤ 4 Å

ATPATP
drugDrugBank DB00171within 5 Å only
(4R,5R)-1,2-dithiane-4,5-diolDTD
drugDrugBank DB01822within 5 Å only

Pfam Families

PF00069Pkinase

Protein kinase domain

ClanCL0016PKinase

External Links

ECOD PDB View: 5LVO RCSB PDB: 5LVO PDBe: 5LVO UniProt: O15530

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

2-oxidanylidenepropyl ~{N}-(2-chloranyl-6-fluoranyl-phenyl)carbonyl-~{N}'-(4-chlorophenyl)carbamimidothioate78W

within 5 Å only

Chloride ionCL

within 5 Å only

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxideDMS
DrugBank DB01093within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.