ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5layB1 - ECOD Domain | ECOD

ECOD/Domains/e5layB1

e5layB1

UID: 001893603

PDB

Range: B:18-111
PDB: 5LAY chain B(all domains)
UniProt: Q00987 (all domains)
Gene: MDM2

Molecule: E3 ubiquitin-protein ligase Mdm2

3D Structure

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Related Domains

Browse other domains in SWIB →

Classification

AArchitecturealpha arrays(a.6)

XX-groupSWIB/MDM2 domain(178)

HH-groupSWIB/MDM2 domain(178.1)

TT-groupSWIB/MDM2 domain(178.1.1)

FFamilySWIB(178.1.1.1)

Ligands

in contact, ≤ 4 Å

(3~{S},3'~{S},4'~{S},5'~{S})-4'-azanyl-6-chloranyl-3'-(3-chloranyl-2-fluoranyl-phenyl)-1'-[(3-ethoxyphenyl)methyl]-5'-methyl-spiro[1~{H}-indole-3,2'-pyrrolidine]-2-one6SS

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

SWIB/MDM2 domain

ClanCL0906SWIB

External Links

ECOD PDB View: 5LAY RCSB PDB: 5LAY PDBe: 5LAY UniProt: Q00987

Downloads

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Drug annotations from DrugDomain.