ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ehmB1 - ECOD Domain | ECOD

ECOD/Domains/e5ehmB1

e5ehmB1

UID: 001916803

PDB

Range: B:8-112,B:222-264
PDB: 5EHM chain B(all domains)
UniProt: Q8MS48 (all domains)
Gene: KaiR1D

Molecule: RE06730p,CG3822

3D Structure

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Related Domains

Browse other domains in Lig_chan-Glu_bd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLig_chan-Glu_bd(7523.1.1.20)

Ligands

in contact, ≤ 4 Å

N-methyl-D-aspartic acidOEM

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF10613Lig_chan-Glu_bd

Ligated ion channel L-glutamate- and glycine-binding site

ClanCL0177PBP

External Links

ECOD PDB View: 5EHM RCSB PDB: 5EHM PDBe: 5EHM UniProt: Q8MS48

Downloads

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