ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5l5sY1 - ECOD Domain | ECOD

ECOD/Domains/e5l5sY1

e5l5sY1

UID: 001917736

PDB

Range: Y:1-211
PDB: 5L5S chain Y(all domains)
UniProt: P28062 (all domains)
Gene: PSMB8

Molecule: Proteasome subunit beta type-8,Proteasome subunit beta type-5

3D Structure

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Related Domains

Browse other domains in Proteasome →

Classification

AArchitecturea+b four layers(a.13)

XX-groupNtn/PP2C(210)

HH-groupNtn(210.1)

TT-groupProteasome subunits(210.1.1)

FFamilyProteasome(210.1.1.1)

Ligands

in contact, ≤ 4 Å

N-[(3-methyl-1H-inden-2-yl)carbonyl]-D-alanyl-N-[(2S,4R)-5-hydroxy-4-methyl-3-oxo-1-phenylpentan-2-yl]-L-tryptophanamide39V
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00227Proteasome

Proteasome subunit

ClanCL0052NTN

External Links

ECOD PDB View: 5L5S RCSB PDB: 5L5S PDBe: 5L5S UniProt: P28062

Downloads

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