ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5l5yJ1 - ECOD Domain | ECOD

ECOD/Domains/e5l5yJ1

e5l5yJ1

UID: 001917901

PDB

Range: J:1-195
PDB: 5L5Y chain J(all domains)
UniProt: P22141 (all domains)
Gene: PRE1

Molecule: Proteasome subunit beta type-4

3D Structure

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Related Domains

Browse other domains in Proteasome →

Classification

AArchitecturea+b four layers(a.13)

XX-groupNtn/PP2C(210)

HH-groupNtn(210.1)

TT-groupProteasome subunits(210.1.1)

FFamilyProteasome(210.1.1.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 1 additive (2-(N-morpholino)ethanesulfonic acid)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Shown in the structure viewer.

Pfam Families

PF00227Proteasome

Proteasome subunit

ClanCL0052NTN

External Links

ECOD PDB View: 5L5Y RCSB PDB: 5L5Y PDBe: 5L5Y UniProt: P22141

Downloads

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Drug annotations from DrugDomain.