ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5m1gB1 - ECOD Domain | ECOD

ECOD/Domains/e5m1gB1

e5m1gB1

UID: 001921012

PDB

Range: B:381-479
PDB: 5M1G chain B(all domains)
UniProt: P14349 (all domains)
Gene: gag

Molecule: Gag polyprotein (Pr71Gag) [Cleaved into: Gag protein (p68Gag); p3 (p3Gag)]

3D Structure

Loading viewer...

Related Domains

Browse other domains in Gag_FV_central →

Classification

AArchitecturealpha bundles(a.7)

XX-groupRetrovirus capsid protein(170)

HH-groupRetrovirus capsid protein-C(170.1)

TT-groupRetrovirus capsid protein-C(170.1.1)

FFamilyGag_FV_central(170.1.1.6)

Pfam Families

PF20672Gag_FV_central

Spumavirus Gag polyprotein, conserved central domain

ClanCL0148Viral_Gag

External Links

ECOD PDB View: 5M1G RCSB PDB: 5M1G PDBe: 5M1G UniProt: P14349

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure