ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5tgaL51 - ECOD Domain | ECOD

ECOD/Domains/e5tgaL51

e5tgaL51

UID: 001922912

PDB

Range: L5:2-297
PDB: 5TGA chain L5(all domains)
UniProt: P26321 (all domains)
Gene: RPL5

Molecule: 60S ribosomal protein L5

3D Structure

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Related Domains

Browse other domains in Ribosomal_L18_c,Ribosomal_L5e →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyRibosomal_L18_c,Ribosomal_L5e(2484.1.1.69)

Ligands

in contact, ≤ 4 Å

Cytidine-5'-MonophosphateC
drugDrugBank DB03403within 5 Å only
Magnesium ionMG
metal
osmium (III) hexammineOHX

Pfam Families

PF14204Ribosomal_L18_c

Ribosomal L18 C-terminal region

PF17144Ribosomal_L5e

Ribosomal large subunit proteins 60S L5, and 50S L18

ClanCL0267S11_L18p

External Links

ECOD PDB View: 5TGA RCSB PDB: 5TGA PDBe: 5TGA UniProt: P26321

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.