ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5kp9B1 - ECOD Domain | ECOD

ECOD/Domains/e5kp9B1

e5kp9B1

UID: 001931107

PDB

Range: B:0-201
PDB: 5KP9 chain B(all domains)
UniProt: P03347 (all domains)
Gene: gag

Molecule: Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer peptide 1 (SP1) (p2); Nucleocapsid protein p7 (NC); Spacer peptide 2 (SP2) (p1); p6-gag]

3D Structure

Loading viewer...

Related Domains

Browse other domains in Aldolase →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyAldolase(2002.1.1.49)

Pfam Families

PF01081Aldolase

KDPG and KHG aldolase

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 5KP9 RCSB PDB: 5KP9 PDBe: 5KP9 UniProt: P03347

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure