ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5merB1 - ECOD Domain | ECOD

ECOD/Domains/e5merB1

e5merB1

UID: 001931281

PDB

Range: B:0-99
PDB: 5MER chain B(all domains)
UniProt: P61769 (all domains)
Gene: B2M

Molecule: Beta-2-microglobulin

3D Structure

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Related Domains

Browse other domains in C1-set →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyC1-set(11.1.1.96)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (2-(N-morpholino)ethanesulfonic acid, Sulfate ion, 1,2-ETHANEDIOL)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814
Sulfate ionSO4
DrugBank DB14546

Pfam Families

Immunoglobulin C1-set domain

ClanCL0159E-set

External Links

ECOD PDB View: 5MER RCSB PDB: 5MER PDBe: 5MER UniProt: P61769

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOL

Shown in the structure viewer. Drug annotations from DrugDomain.