ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5hrnA1 - ECOD Domain | ECOD

ECOD/Domains/e5hrnA1

e5hrnA1

UID: 001933519

PDB

Range: A:57-208
PDB: 5HRN chain A(all domains)
UniProt: P04585 (all domains)
Gene: gag-pol

Molecule: Integrase

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

(2S)-tert-butoxy[1-(3,4-difluorobenzyl)-6-methyl-4-(5-methyl-3,4-dihydro-2H-chromen-6-yl)-1H-pyrrolo[2,3-b]pyridin-5-yl]acetic acid65P

+ 3 additives (Sulfate ion, Cacodylate ion, 1,2-ETHANEDIOL)

Sulfate ionSO4
DrugBank DB14546
Cacodylate ion

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 5HRN RCSB PDB: 5HRN PDBe: 5HRN UniProt: P04585

Downloads

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1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.