ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5m1dB3 - ECOD Domain | ECOD

ECOD/Domains/e5m1dB3

e5m1dB3

UID: 001942815

PDB

Range: B:6-96
PDB: 5M1D chain B(all domains)
UniProt: P0AAB5 (all domains)
Gene: ubiD

Molecule: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.98) (Polyprenyl p-hydroxybenzoate decarboxylase)

3D Structure

Loading viewer...

Related Domains

Browse other domains in UbiD_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupN-terminal subdomain in UbiD middle domain(3688)

HH-groupN-terminal subdomain in UbiD middle domain(3688.1)

TT-groupN-terminal subdomain in UbiD middle domain(3688.1.1)

FFamilyUbiD_N(3688.1.1.1)

Pfam Families

3-octaprenyl-4-hydroxybenzoate carboxy-lyase N-terminal domain

External Links

ECOD PDB View: 5M1D RCSB PDB: 5M1D PDBe: 5M1D UniProt: P0AAB5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure