ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5h12A3 - ECOD Domain | ECOD

ECOD/Domains/e5h12A3

e5h12A3

UID: 001948638

PDB

Range: A:449-502
PDB: 5H12 chain A(all domains)
UniProt: Q51334 (all domains)
Gene: pol

Molecule: DNA polymerase (EC 2.7.7.7) (Deep vent DNA polymerase) [Cleaved into: Homing endonuclease PI-PspI (EC 3.1.-.-) (Psp-GDB pol intein)]

3D Structure

Loading viewer...

Related Domains

Browse other domains in DNA_pol_B →

Classification

AArchitecturealpha bundles(a.7)

XX-group"fingers" domain in bacteriophage RB69-like DNA polymerase I(4970)

HH-group"fingers" domain in bacteriophage RB69-like DNA polymerase I(4970.1)

TT-group"fingers" domain in bacteriophage RB69-like DNA polymerase I(4970.1.1)

FFamilyDNA_pol_B(4970.1.1.1)

Pfam Families

PF00136DNA_pol_B

DNA polymerase family B

ClanCL0194DNA_pol_B-like

External Links

ECOD PDB View: 5H12 RCSB PDB: 5H12 PDBe: 5H12 UniProt: Q51334

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure