ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4ybbDM1 - ECOD Domain | ECOD

ECOD/Domains/e4ybbDM1

e4ybbDM1

UID: 001951563

PDB

Range: DM:1-144
PDB: 4YBB chain DM(all domains)
UniProt: P02413 (all domains)
Gene: rplO

Molecule: 50S ribosomal protein L15

3D Structure

Loading viewer...

Related Domains

Browse other domains in Ribosomal_L27A, Ribosomal_uL15_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRibosomal protein L13/L15p/L18e/L32e(2490)

HH-groupRibosomal proteins L15p and L18e(2490.3)

TT-groupRibosomal proteins L15p and L18e(2490.3.1)

FFamilyRibosomal_L27A, Ribosomal_uL15_N(2490.3.1.3)

Ligands

in contact, ≤ 4 Å

PutrescinePUT
drugDrugBank DB01917
Magnesium ionMG
metal

+ 1 additive ((4S)-2-METHYL-2,4-PENTANEDIOL)

(4S)-2-METHYL-2,4-PENTANEDIOLMPD

Shown in the structure viewer.

Pfam Families

PF00828Ribosomal_L27A

Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A

ClanCL0588Ribos_L15p_L18e

PF29471Ribosomal_uL15_N

Ribosomal protein uL15, N-terminal region

External Links

ECOD PDB View: 4YBB RCSB PDB: 4YBB PDBe: 4YBB UniProt: P02413

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.