ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5b5eb1 - ECOD Domain | ECOD

ECOD/Domains/e5b5eb1

e5b5eb1

UID: 001954239

PDB

Range: b:329-444
PDB: 5B5E chain b(all domains)
UniProt: D0VWR1 (all domains)
Gene: psbB

Molecule: Photosystem II CP47 reaction center protein

3D Structure

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Related Domains

Browse other domains in PSII →

Classification

AArchitecturea+b two layers(a.11)

XX-groupPhotosystem II antenna protein PsbB insertion domain(3744)

HH-groupPhotosystem II antenna protein PsbB insertion domain(3744.1)

TT-groupPhotosystem II antenna protein PsbB insertion domain(3744.1.1)

FFamilyPSII(3744.1.1.1)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Chlorophyll aCLA
heptyl 1-thio-beta-D-glucopyranosideHTG
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

Pfam Families

Photosystem II protein

External Links

ECOD PDB View: 5B5E RCSB PDB: 5B5E PDBe: 5B5E UniProt: D0VWR1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Unknown ligandUNL

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxideDMS
DrugBank DB01093

Shown in the structure viewer. Drug annotations from DrugDomain.