ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5b5eH1 - ECOD Domain | ECOD

ECOD/Domains/e5b5eH1

e5b5eH1

UID: 001954249

PDB

Range: H:2-64
PDB: 5B5E chain H(all domains)
UniProt: P19052 (all domains)
Gene: psbH

Molecule: Photosystem II reaction center protein H

3D Structure

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Related Domains

Browse other domains in PsbH →

Classification

AArchitectureextended segments(a.20)

XX-groupPhotosystem II 10 kDa phosphoprotein PsbH(5032)

HH-groupPhotosystem II 10 kDa phosphoprotein PsbH(5032.1)

TT-groupPhotosystem II 10 kDa phosphoprotein PsbH(5032.1.1)

FFamilyPsbH(5032.1.1.1)

Ligands

in contact, ≤ 4 Å

Chlorophyll ACLA
drugDrugBank DB02133
Digalactosyl Diacyl Glycerol (Dgdg)DGD
drugDrugBank DB03426

Pfam Families

Photosystem II 10 kDa phosphoprotein

External Links

ECOD PDB View: 5B5E RCSB PDB: 5B5E PDBe: 5B5E UniProt: P19052

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Heptyl 1-Thiohexopyranoside

drugDrugBank DB04450

CryptoxanthinRRX

drugDrugBank DB15914

1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

Unknown ligandUNL

+ 2 additives (Dimethyl sulfoxide, Dodecyl-beta-d-maltoside)

Dimethyl sulfoxideDMS
DrugBank DB01093
Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.