ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5b5ei1 - ECOD Domain | ECOD

ECOD/Domains/e5b5ei1

e5b5ei1

UID: 001954252

PDB

Range: i:1-38
PDB: 5B5E chain i(all domains)
UniProt: P12240 (all domains)
Gene: psbI

Molecule: Photosystem II reaction center protein I

3D Structure

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Related Domains

Browse other domains in PsbI →

Classification

AArchitectureextended segments(a.20)

XX-groupPhotosystem II reaction center protein I, PsbI(5035)

HH-groupPhotosystem II reaction center protein I, PsbI(5035.1)

TT-groupPhotosystem II reaction center protein I, PsbI(5035.1.1)

FFamilyPsbI(5035.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Chlorophyll ACLA
drugDrugBank DB02133
1,2-Dipalmitoyl-Phosphatidyl-Glycerole

Pfam Families

Photosystem II reaction centre I protein (PSII 4.8 kDa protein)

External Links

ECOD PDB View: 5B5E RCSB PDB: 5B5E PDBe: 5B5E UniProt: P12240

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB02043

1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

Unknown ligandUNL

+ 2 additives (Dimethyl sulfoxide, Dodecyl-beta-d-maltoside)

Dimethyl sulfoxideDMS
Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.