ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1wbmB1 - ECOD Domain | ECOD

ECOD/Domains/e1wbmB1

e1wbmB1

UID: 000020038

PDB

Range: B:1-99
PDB: 1WBM chain B(all domains)
UniProt: Q8Q3H0 (all domains)
Gene: pol

Molecule: POL PROTEIN (FRAGMENT)

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

(2R,3R,4R,5R)-3,4-Dihydroxy-N,N'-bis[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-2,5-bis(2-phenylethyl)hexanediamideBLL
drugDrugBank DB02704

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 1WBM RCSB PDB: 1WBM PDBe: 1WBM UniProt: Q8Q3H0

Downloads

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