ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ij1B1 - ECOD Domain | ECOD

ECOD/Domains/e5ij1B1

e5ij1B1

UID: 002010340

PDB

Range: B:252-370
PDB: 5IJ1 chain B(all domains)
UniProt: A3CM52 (all domains)
Gene: srpA

Molecule: Platelet-binding glycoprotein

3D Structure

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Related Domains

Browse other domains in GspA_SrpA_N →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyGspA_SrpA_N(11.1.1.292)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF20164GspA_SrpA_N

GspA/SrpA SigLec-like domain

ClanCL0159E-set

External Links

ECOD PDB View: 5IJ1 RCSB PDB: 5IJ1 PDBe: 5IJ1 UniProt: A3CM52

Downloads

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