ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ij3A1 - ECOD Domain | ECOD

ECOD/Domains/e5ij3A1

e5ij3A1

UID: 002010346

PDB

Range: A:371-448
PDB: 5IJ3 chain A(all domains)
UniProt: A3CM52 (all domains)
Gene: srpA

Molecule: Platelet-binding glycoprotein

3D Structure

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Related Domains

Browse other domains in aRib →

Classification

AArchitecturea+b two layers(a.11)

XX-groupa+b domain in platelet binding protein GspB(6107)

HH-groupa+b domain in platelet binding protein GspB(6107.1)

TT-groupa+b domain in platelet binding protein GspB(6107.1.1)

FFamilyaRib(6107.1.1.2)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Atypical Rib domain

ClanCL0159E-set

External Links

ECOD PDB View: 5IJ3 RCSB PDB: 5IJ3 PDBe: 5IJ3 UniProt: A3CM52

Downloads

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