ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5m7lC1 - ECOD Domain | ECOD

ECOD/Domains/e5m7lC1

e5m7lC1

UID: 002010527

PDB

Range: C:1-301
PDB: 5M7L chain C(all domains)
UniProt: P06010 (all domains)
Gene: pufM

Molecule: Reaction center protein M chain

3D Structure

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Related Domains

Browse other domains in Photo_RC →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBacterial photosystem II reaction centre L and M subunits-like(5037)

HH-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1)

TT-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1.1)

FFamilyPhoto_RC(5037.1.1.1)

Ligands

in contact, ≤ 4 Å

Bacteriochlorophyll ABCL
drugDrugBank DB01853
[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoateMPG
drugDrugBank DB03831

Pfam Families

PF00124Photo_RC

Photosynthetic reaction centre protein

External Links

ECOD PDB View: 5M7L RCSB PDB: 5M7L PDBe: 5M7L UniProt: P06010

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Menaquinone 7MQ7

drugDrugBank DB13075

Bacteriopheophytin bBPB

Diacyl glycerolDGA

FE (II) IONFE2

metal

Heme cHEC

15-cis-1,2-dihydroneurosporeneNS5

(2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL TRIHYDROGEN DIPHOSPHATEOTP

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.