ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5j72B1 - ECOD Domain | ECOD

ECOD/Domains/e5j72B1

e5j72B1

UID: 002033085

PDB

Range: B:267-458
PDB: 5J72 chain B(all domains)
UniProt: Q183L9 (all domains)
Gene: cwp6

Molecule: Putative N-acetylmuramoyl-L-alanine amidase,autolysin cwp6

3D Structure

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Related Domains

Browse other domains in CW_binding_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupEndolysin C-terminal domain(7597)

HH-groupEndolysin C-terminal domain(7597.1)

TT-groupEndolysin C-terminal domain(7597.1.1)

FFamilyCW_binding_2(7597.1.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Sodium ionNA
metal

+ 1 additive (Citric acid)

Citric acidCIT

Pfam Families

PF04122CW_binding_2

Cell wall binding domain 2 (CWB2)

External Links

ECOD PDB View: 5J72 RCSB PDB: 5J72 PDBe: 5J72 UniProt: Q183L9

Downloads

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DrugBank DB04272

Shown in the structure viewer. Drug annotations from DrugDomain.