ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5ws6b1 - ECOD Domain | ECOD

ECOD/Domains/e5ws6b1

e5ws6b1

UID: 002042853

PDB

Range: b:2-328,b:445-505
PDB: 5WS6 chain b(all domains)
UniProt: D0VWR1 (all domains)
Gene: psbB

Molecule: Photosystem II CP47 reaction center protein

3D Structure

Loading viewer...

Related Domains

Browse other domains in PSII →

Classification

AArchitecturealpha bundles(a.7)

XX-groupPhotosystem II antenna protein-like(5075)

HH-groupPhotosystem II antenna protein-like(5075.1)

TT-groupPhotosystem II antenna protein-like(5075.1.1)

FFamilyPSII(5075.1.1.2)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Chlorophyll ACLA
drugDrugBank DB02133
Digalactosyl Diacyl Glycerol (Dgdg)

Pfam Families

Photosystem II protein

External Links

ECOD PDB View: 5WS6 RCSB PDB: 5WS6 PDBe: 5WS6 UniProt: D0VWR1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB03426

Heptyl 1-ThiohexopyranosideHTG

drugDrugBank DB04450

1,2-Dipalmitoyl-Phosphatidyl-GlyceroleLHG

drugDrugBank DB02043

1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

Unknown ligandUNL

+ 2 additives (Glycerin, Dodecyl-beta-d-maltoside)

GlycerinGOL
DrugBank DB09462
Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.