ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5pydA1 - ECOD Domain | ECOD

ECOD/Domains/e5pydA1

e5pydA1

UID: 002045954

PDB

Range: A:753-878
PDB: 5PYD chain A(all domains)
UniProt: P23497 (all domains)
Gene: SP100

Molecule: Nuclear autoantigen Sp-100

3D Structure

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Related Domains

Browse other domains in Bromodomain →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBromodomain-like(633)

HH-groupBromodomain(633.1)

TT-groupBromodomain(633.1.1)

FFamilyBromodomain(633.1.1.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 2 additives (2-(N-morpholino)ethanesulfonic acid, 1,2-ETHANEDIOL)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Pfam Families

PF00439Bromodomain

Bromodomain

External Links

ECOD PDB View: 5PYD RCSB PDB: 5PYD PDBe: 5PYD UniProt: P23497

Downloads

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1,2-ETHANEDIOL

Shown in the structure viewer. Drug annotations from DrugDomain.