ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5mg3D3 - ECOD Domain | ECOD

ECOD/Domains/e5mg3D3

e5mg3D3

UID: 002057081

PDB

Range: D:23-27,D:226-286
PDB: 5MG3 chain D(all domains)
UniProt: P0AG90 (all domains)
Gene: secD

Molecule: Protein translocase subunit SecD (Sec translocon accessory complex subunit SecD)

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupFerredoxin domains in multidrug efflux transporter(304.28)

TT-groupMultidrug efflux transporter AcrB pore domain(304.28.1)

FFamilySecD_1st(304.28.1.4)

Pfam Families

PF21760SecD_1st

Protein translocase subunit SecDF, P1 domain, N-terminal

ClanCL0322RND_permease

External Links

ECOD PDB View: 5MG3 RCSB PDB: 5MG3 PDBe: 5MG3 UniProt: P0AG90

Downloads

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