ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5t3aA1 - ECOD Domain | ECOD

ECOD/Domains/e5t3aA1

e5t3aA1

UID: 002060231

PDB

Range: A:60-221
PDB: 5T3A chain A(all domains)
UniProt: P35956 (all domains)
Gene: pol

Molecule: integrase

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (2-(N-morpholino)ethanesulfonic acid, Acetate ion)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814
Acetate ionACT

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 5T3A RCSB PDB: 5T3A PDBe: 5T3A UniProt: P35956

Downloads

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